PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG313900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 442aa    MW: 47265.9 Da    PI: 7.8698
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG313900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.87.6e-18236291256
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          r+++++t+eq++eLe  Fe+ + ++  e++ eLA++lg+  rqV vWFqNrRa++k
  Pavir.2KG313900.1.p 236 RTKRRLTAEQVRELELSFEEeKLKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 291
                          77889**************9899********************************9 PP

2HD-ZIP_I/II117.29.3e-38237328292
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           krrl++eqv+ LE sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+k+kqlE+d+++L++a+d+l + +++L +++++Lr++
  Pavir.2KG313900.1.p 237 TKRRLTAEQVRELELSFEEEKlKLEPERKSELARRLGIAPRQVAVWFQNRRARWKAKQLEQDFDRLRAAHDELLAGRDALLADNDRLRSQ 326
                          69**************************************************************************************99 PP

          HD-ZIP_I/II  91 lk 92 
                          + 
  Pavir.2KG313900.1.p 327 VI 328
                          86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.76E-17228295IPR009057Homeodomain-like
PROSITE profilePS5007117.313232293IPR001356Homeobox domain
SMARTSM003893.9E-16234297IPR001356Homeobox domain
PfamPF000465.3E-15236291IPR001356Homeobox domain
CDDcd000865.35E-12236294No hitNo description
Gene3DG3DSA:1.10.10.606.3E-18242292IPR009057Homeodomain-like
PRINTSPR000316.0E-6264273IPR000047Helix-turn-helix motif
PROSITE patternPS000270268291IPR017970Homeobox, conserved site
PRINTSPR000316.0E-6273289IPR000047Helix-turn-helix motif
PfamPF021831.0E-12293335IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MGFSEIGGAH PQLDPPLLPA VYPVSSQIPS IEDDSPSSGP QPTGSASHQT RGRHRRGQFL  60
RPPCVSSHKT CGGEACCVLP RRRRHGVHAA VPHQVVDARA VEHQLLPPQV PGHRGLLLIR  120
LAPAAGDTPP CFYRSGGGAY IRTPIHLRGA IPRRRRRRRA GVLFGGGGGG GGGGGGFLRG  180
APVVGAAGAA NGWRRGKRPF QLTAAAHEEL QLQLELGDDE LAGFDFELHG GGAQERTKRR  240
LTAEQVRELE LSFEEEKLKL EPERKSELAR RLGIAPRQVA VWFQNRRARW KAKQLEQDFD  300
RLRAAHDELL AGRDALLADN DRLRSQVITL ADKLQAKESS VPAAALQAAP YAPFEQDQLC  360
TETATTAGAA PPAGYDTGGA GDSPEAGARS PPSSSEDDCR GGDGDGGAFY LPDPDTLLAA  420
AAQEDGAQLS TWAWLWNEQQ Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158RRRRRRR
2285293RRARWKAKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568501e-102AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959426.11e-111PREDICTED: homeobox-leucine zipper protein HOX25-like
SwissprotA3BYC11e-66HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLK3ZVK91e-111K3ZVK9_SETIT; Uncharacterized protein
STRINGSi030640m1e-110(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-27homeobox 1